Triple Test Cross

Genetic mapping

In order to do the triple test cross it is essential that you be able to:

1. Detect linkage by contingency Chi-square  

REVIEW

2. Detect % recombination by observing the number of recombinant phenotypes in a backcross as compared to the total.

REVIEW

 

3. With this information it is possible to construct maps showing the order and distance between genes on a chromosome.
4. Such mapping usually accomplished with three genes at a time. We call this the triple test-cross.

 Since this is a linkage test cross and we are going to consider three genes at a time.  First  mate a triple heterozygote  to a completely recessive individual.  If these three genes were independently assorting, then the triple heterozygote would make 8 gametes and have progeny showing 8 different phenotypes  in equal frequencies.


Example:

In rumbunnies:

Spock ears (D) are dominant to earless (d)

Red eyes (A) are dominant to blue eyes (a)

Spinner eyes (E) are dominant to nonspinner (e)

P1  ADE/ADE X ade/ade
F1  ADE/ade (if we know the cross, the parental gametes are those seen in the parental generation, i.e., ADE and ade)
Test cross ADE/ade  x  ade/ade

 

 

Observed Phenotypes Number Genotype  
Red Spock Spinner 8576 ADE/ade  
Blue Earless Nonspinner 8808 ade/ade  
Red Spock Nonspinner 681 ADe/ade  
Blue Earless Spinner 716 adE/ade  
Blue Spock Spinner 1002 aDE/ade  
Red Earless Nonspinner  997 Ade/ade  
Red Earless Spinner 4 ADe/ade  
Blue Spock Nonspinner 1 adE/ade  
Total 20875    

 

We can use the above information to construct a statistical map giving the relative order of the three genes and the relative distances between those genes.  This statistical map can eventually be related to the physical map of the chromosomes.

Important Information for mapping
1. From previous work it is known that the three genes  are all on the same chromosome.
2. The genes are arranged in one of three orders*
          ADE 
          AED 
          DAE
* since we are constructing a relative map, the order ADE and EDA are considered  to be the same.
3. The statistical distance between the genes is the frequency at which they recombine. (Recombination % = map units or centimorgans).
4. A single crossover event occurs more frequently than a double crossover event (that is, two single crossovers occur simultaneously). Thus the least  frequent pair of phenotypes represent gametes that arose from a  double crossover events.
5. Single crossover phenotypes (representing gametes) define the ends of the map. The double crossover gametes (when seen) define the middle of the map).
6. The gametes resulting from each type of crossover events is compared to the parental gametes..

In the example given above, parental gametes (the most frequent ones) are ADE and ade.  The least frequent  pair of gametes is AdE & aDe. These are the double crossover gametes.

When I compare the double crossover (DC) gametes to  the parental gametes  I see that the Spock/earless  allele has "switched" chromosomes.

Parental Gametes DC Gametes
ADE AdE
ade aDe

This means that the Spock-earless gene (D)  is in the middle and the map order is:

A----------------D-----------E

 

Now I calculate the distances from the % of single and double recombinant gametes (phenotypes).  For convenience I will call the gametes from one of the single crossover events Pair X and the gametes of the other single crossover event Pair Y.  When I compare Pair X to the parental types (Pair W) I see that spinner-nonspinner gene (E) has "switched" chromosomes. This represents a crossover between the gene in the middle (D) and the gene on one end (E). The distance between D and E is the % recombination shown by the Pair X plus the frequencies of Double crossovers (since the DC's also represent a recombination event between D and E)

 

Parental Gametes DC Gametes Pair X Gametes 
ADE AdE ADe
ade aDe adE

 

Distance D-E =  [(681 + 716)/20875] + [(1 + 5)/20875]

Distance D-E = 6.72% + .02%  = 6.74% = 6.74 map units

 

Similarly, I compare SC-Pair Y to  the parental gametes  In this case the alleles for Red eyes/blue eyes (A) have "switched" chromosomes. This represents a crossover between gene A on the end and gene D in the middle. The distance is the single crossover frequency  plus the DC frequency.

 

Parental Gametes DC Gametes Pair Y Gametes  Pair X Gametes 
ADE AdE aDE ADe
ade aDe Ade adE

 

Distance A - D =  9.62% + .02%  = 9.64 map units

The Genetic Map is:

A-------------- D--- -----------E
9.64 6.74

 

Example where double crossover types are not observed.

In rumbunnies:

Bulb nose (B) is dominant to pug nose (b)

Mossy teeth (M) is dominant to slick teeth (m)

Bad breath (S) is dominant to minty (s)

 

P1 Bms/Bms x bMS/bMS

F1 Bms/bMS (parental gametes are Bms and bMS)

B1 Bms/bMS x bms/bms

 

Expected Phenotypes - with three loci we expect 2 x 2 x 2 = 8 phenotypes in a 1:1:1:1:1:1:1:1 ratio. The eight phenotypes will be (B:b) x (M:m) x (S:s)

BMS bulb mossy bad breath

BMs bulb mossy minty

BmS bulb slick bad breath

Bms bulb slick minty

bMS pug mossy bad breath

bMs pug mossy minty

bmS pug slick bad breath

bms pug slick minty


The observed phenotypes are:

Gamete Phenotype Number
BMS mossy bad breath  443
BMs bulb mossy minty  293
Bms bulb slick minty  3458
bMS pug mossy bad breath  656
bmS pug slick bad breath  281
bms bms pug slick minty  445

That is, we are missing:

BmS bulb slick bad breath 0

bMs pug mossy minty 0

Since these phenotypes occur in the lowest frequency (that is, 0%) these must be the double crossover types.

Now, for ease of working I am going to "pair up" the single crossover and parental types. That is, if one genotype had the B allele, the paired partner must have the b allele; if one has the M allele the other has the m allele, and if one has the S allele the other has the s allele,

 

Parentals Bms  bulb slick minty  3458
      (Pair W) bMS pug mossy bad breath  3656
Single Crossover BMs bulb mossy minty 293 293
      (Pair X) bmS pug slick bad breath 281 281
Single Crossover bms pug slick minty  445
      (Pair Y) BMS bulb mossy bad breath  443
Double Crossover BmS bulb slick bad breath  0
      (Pair Z)  bMs pug mossy minty  0
Total =  8676

 

Parental Gametes
(Pair W)
DC Gametes
(Pair Z )
SC Gametes 
(Pair X)
SC Gametes
 (Pair Y)
BMs BmS BMs bms
bmS bMs bmS BMS

 

Comparing the DC gametes to the parental gametes we see that the S locus has switched positions. It must be in the middle and the B and M loci are on the ends. The order of the map is.

B--------------S---------M


Now look at one of the single crossovers  (Pair X) and compare those gametes to the parental gametes.

The difference is that the M locus has crossed over with the middle (S). The distance is the % of  single crossover phenotypes (for Pair X) plus any Double crossover types (zero in this case).

Distance M --- S = (293 + 281)/8676 = 6.6% + 0 map units.


Now look at the the single crossover gametes  (Pair Y) and compare those gametes to the parental gametes.

The difference is that the B locus has crossed over with the middle S locus.

Distance B ----- S = (445 + 443)/8676 = 10.2% = 10.2 map units. The final map is then:

      10.2 6.6
B--------------S---------M

 

Additional Topics

Test Cross
Test cross for two genes
Test cross reveals the number and nature of gametes
Test cross can detect linked genes
Test cross to detect linkage for RFLP's
Triple Test Cross

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