Triple Test Cross |
Genetic mapping
In order to do the triple test cross it is essential that you be able to:
1. | Detect linkage by contingency Chi-square | ||
2. | Detect % recombination by observing the number of recombinant phenotypes in a backcross as compared to the total. |
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3. | With this information it is possible to construct maps showing the order and distance between genes on a chromosome. | ||
4. | Such mapping usually accomplished with three genes at a time. We call this the triple test-cross. |
Since this is a linkage test cross and we are going to consider three genes at a time. First mate a triple heterozygote to a completely recessive individual. If these three genes were independently assorting, then the triple heterozygote would make 8 gametes and have progeny showing 8 different phenotypes in equal frequencies.
Example:
In rumbunnies:
Spock ears (D) are dominant to earless (d)
Red eyes (A) are dominant to blue eyes (a)
Spinner eyes (E) are dominant to nonspinner (e)
P1 | ADE/ADE | X | ade/ade | |
F1 | ADE/ade | (if we know the cross, the parental gametes are those seen in the parental generation, i.e., ADE and ade) | ||
Test cross | ADE/ade | x | ade/ade |
Observed Phenotypes | Number | Genotype | |
Red Spock Spinner | 8576 | ADE/ade | |
Blue Earless Nonspinner | 8808 | ade/ade | |
Red Spock Nonspinner | 681 | ADe/ade | |
Blue Earless Spinner | 716 | adE/ade | |
Blue Spock Spinner | 1002 | aDE/ade | |
Red Earless Nonspinner | 997 | Ade/ade | |
Red Earless Spinner | 4 | ADe/ade | |
Blue Spock Nonspinner | 1 | adE/ade | |
Total | 20875 |
We can use the above information to construct a statistical map giving the relative order of the three genes and the relative distances between those genes. This statistical map can eventually be related to the physical map of the chromosomes.
Important
Information for mapping |
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1. | From previous work it is known that the three
genes are all on the same chromosome. |
2. | The genes are arranged in one of three orders* |
ADE | |
AED | |
DAE | |
* since we are constructing a
relative map, the order ADE and EDA are considered to be the
same. |
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3. | The statistical distance between
the genes is the frequency at which they recombine.
(Recombination % = map units or centimorgans). |
4. | A single crossover event occurs more frequently than a double crossover
event (that
is, two single crossovers occur simultaneously). Thus the least frequent
pair of phenotypes represent gametes that arose from a double
crossover events. |
5. | Single crossover phenotypes (representing gametes)
define the ends of the map. The double crossover gametes (when seen)
define the middle of the map). |
6. | The gametes resulting from each type of crossover events is compared to the parental gametes.. |
In the example given above, parental gametes (the most frequent ones) are ADE and ade. The least frequent pair of gametes is AdE & aDe. These are the double crossover gametes.
When I compare the double crossover (DC) gametes to the parental gametes I see that the Spock/earless allele has "switched" chromosomes.
Parental Gametes | DC Gametes |
ADE | AdE |
ade | aDe |
This means that the Spock-earless gene (D) is in the middle and the map order is:
A----------------D-----------E
Now I calculate the distances from the % of single and double recombinant gametes (phenotypes). For convenience I will call the gametes from one of the single crossover events Pair X and the gametes of the other single crossover event Pair Y. When I compare Pair X to the parental types (Pair W) I see that spinner-nonspinner gene (E) has "switched" chromosomes. This represents a crossover between the gene in the middle (D) and the gene on one end (E). The distance between D and E is the % recombination shown by the Pair X plus the frequencies of Double crossovers (since the DC's also represent a recombination event between D and E)
Parental Gametes | DC Gametes | Pair X Gametes |
ADE | AdE | ADe |
ade | aDe | adE |
Distance D-E = [(681 + 716)/20875] + [(1 + 5)/20875]
Distance D-E = 6.72% + .02% = 6.74% = 6.74 map units
Similarly, I compare SC-Pair Y to the parental gametes In this case the alleles for Red eyes/blue eyes (A) have "switched" chromosomes. This represents a crossover between gene A on the end and gene D in the middle. The distance is the single crossover frequency plus the DC frequency.
Parental Gametes | DC Gametes | Pair Y Gametes | Pair X Gametes |
ADE | AdE | aDE | ADe |
ade | aDe | Ade | adE |
Distance A - D = 9.62% + .02% = 9.64 map units
The Genetic Map is:
A-------------- | D--- | -----------E |
9.64 | 6.74 |
Example where double crossover types are not observed.
In rumbunnies:
Bulb nose (B) is dominant to pug nose (b)
Mossy teeth (M) is dominant to slick teeth (m)
Bad breath (S) is dominant to minty (s)
P1 Bms/Bms x bMS/bMS
F1 Bms/bMS (parental gametes are Bms and bMS)
B1 Bms/bMS x bms/bms
Expected Phenotypes - with three loci we expect 2 x 2 x 2 = 8 phenotypes in a 1:1:1:1:1:1:1:1 ratio. The eight phenotypes will be (B:b) x (M:m) x (S:s)
BMS bulb mossy bad breath
BMs bulb mossy minty
BmS bulb slick bad breath
Bms bulb slick minty
bMS pug mossy bad breath
bMs pug mossy minty
bmS pug slick bad breath
bms pug slick minty
The observed phenotypes are:
Gamete | Phenotype | Number |
BMS | mossy bad breath | 443 |
BMs | bulb mossy minty | 293 |
Bms | bulb slick minty | 3458 |
bMS | pug mossy bad breath | 656 |
bmS | pug slick bad breath | 281 |
bms | bms pug slick minty | 445 |
That is, we are missing:
BmS bulb slick bad breath 0
bMs pug mossy minty 0
Since these phenotypes occur in the lowest frequency (that is, 0%) these must be the double crossover types.
Now, for ease of working I am going to "pair up" the single crossover and parental types. That is, if one genotype had the B allele, the paired partner must have the b allele; if one has the M allele the other has the m allele, and if one has the S allele the other has the s allele,
Parentals | Bms | bulb slick minty | 3458 |
(Pair W) | bMS | pug mossy bad breath | 3656 |
Single Crossover | BMs | bulb mossy minty 293 | 293 |
(Pair X) | bmS | pug slick bad breath 281 | 281 |
Single Crossover | bms | pug slick minty | 445 |
(Pair Y) | BMS | bulb mossy bad breath | 443 |
Double Crossover | BmS | bulb slick bad breath | 0 |
(Pair Z) | bMs | pug mossy minty | 0 |
Total = | 8676 |
Parental
Gametes (Pair W) |
DC
Gametes (Pair Z ) |
SC
Gametes (Pair X) |
SC
Gametes (Pair Y) |
BMs | BmS | BMs | bms |
bmS | bMs | bmS | BMS |
Comparing the DC gametes to the parental gametes we see that the S locus has switched positions. It must be in the middle and the B and M loci are on the ends. The order of the map is.
B--------------S---------M
Now look at one of the single crossovers (Pair X) and compare those gametes to the parental gametes.
The difference is that the M locus has crossed over with the middle (S). The distance is the % of single crossover phenotypes (for Pair X) plus any Double crossover types (zero in this case).
Distance M --- S = (293 + 281)/8676 = 6.6% + 0 map units.
Now look at the the single crossover gametes (Pair Y) and compare those gametes to the parental gametes.
The difference is that the B locus has crossed over with the middle S locus.
Distance B ----- S = (445 + 443)/8676 = 10.2% = 10.2 map units. The final map is then:
10.2 | 6.6 | |
B--------------S---------M |
Additional Topics |
Test Cross |
Test cross for two genes |
Test cross reveals the number and nature of gametes |
Test cross can detect linked genes |
Test cross to detect linkage for RFLP's |
Triple Test Cross |